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For both types of substrates considered in this work, pillared and porous with a reservoir, there is always an amount of reminiscent oil on the droplet, which is not absorbed by the substrate due to the interaction with the water and the gas. Both theoretical and numerical models can be easily modified to analyze other types of substrates and liquids.Using first-principles density functional theory calculations, we made an accurate structural characterization of the C60 superstructures self-assembled on the Tl-adsorbed Si(111) and Ge(111) surfaces, which finds a good agreement with the recent scanning tunneling microscopy observations. Our band structure calculations revealed the semi-metallic character of the C60/Tl/Si(111) system, while the C60/Tl/Ge(111) system was found to show up the pronounced metallic character due to the cascade of the flat bands lying in the vicinity of the Fermi level. The latter is a fingerprint for strong correlation effects in the C60/Tl/Ge(111) system, which makes it a promising object for studying electrical transport phenomena and opens the prospects for its application in the molecular-based electronic devices. We elucidated the details of the molecule-substrate and intermolecular interactions and discussed the character of a charge transfer in both systems.A new application of high-repetition rate, femtosecond Yb-laser/amplifier systems is introduced transient 2D IR spectroscopy covering the time range from micro- to milliseconds. This approach intertwines the measurement of 2D IR spectra with the time separation from an actinic pump pulse and utilizes the high repetition rate of these lasers systems in two ways by offering a high time resolution (10 µs) and by enabling the measurement of many 2D IR spectra. The well-studied photocycle of bacteriorhodopsin is used as a demonstration object in this proof-of-principle experiment.Solid-state nanopores are a promising platform for characterizing proteins. In order to improve their lifetime and prevent fouling, Polyethylene Glycol (PEG) grafting is one of the most efficient and low-cost solutions. Different models to calculate the PEG thickness do not consider their interaction with the nanopore inner surface nor the effect of confinement. Here, we investigate by molecular dynamic simulation the PEG conformation inside a nanopore in the case of hydrophobic and hydrophilic nanopores. Our results reveal that the nanopore inner surface plays a role in the PEG organization and, thus, in the speed of the salt constituent. The resulting pair interaction between PEG and its environment clearly shows a more important affinity for K+ compared to Li+ cations.Coupling molecules to the confined light modes of an optical cavity is showing great promise for manipulating chemical reactions. However, to fully exploit this principle and use cavities as a new tool for controlling chemistry, a complete understanding of the effects of strong light-matter coupling on molecular dynamics and reactivity is required. While quantum chemistry can provide atomistic insight into the reactivity of uncoupled molecules, the possibilities to also explore strongly coupled systems are still rather limited due to the challenges associated with an accurate description of the cavity in such calculations. Despite recent progress in introducing strong coupling effects into quantum chemistry calculations, applications are mostly restricted to single or simplified molecules in ideal lossless cavities that support a single light mode only. However, even if commonly used planar mirror micro-cavities are characterized by a fundamental mode with a frequency determined by the distance between the miticipate that the more realistic cavity description in our approach will help to better understand and predict how cavities can modify molecular properties.We report molecular simulations of the interaction between a graphene sheet and different liquids such as water, ethanol, and ethylene glycol. We describe the structural arrangements at the graphene interface in terms of density profiles, number of hydrogen bonds (HBs), and local structuration in neighboring layers close to the surface. We establish the formation of a two-dimensional HB network in the layer closest to the graphene. We also calculate the interfacial tension of liquids with a graphene monolayer and its profile along the direction normal to the graphene to rationalize and quantify the strengthening of the intermolecular interactions in the liquid due to the presence of the surface.Force fields for seven small solute molecules, ethanol, 2-methyl-1-propanol, 2-butanol, cyclohexene, tetrahydropyran, 1,4-dioxane, and 1,4-butanediol, in dilute aqueous solutions were created with the adaptive force matching (AFM) method using MP2 or local MP2 as reference. The force fields provide a way to predict the hydration free energies (HFEs) of these molecules with only electronic structure calculations as reference. For six of the seven molecules, the predicted HFEs are in very good agreement with experiments. For 1,4-butanediol, the model created by force matching LMP2 provides a HFE that is too positive. Further investigation suggests that LMP2 may not be sufficiently accurate for computing HFEs for alcohols with AFM. Other properties, such as enthalpy of hydration, diffusion constants, and vibrational spectra, are also computed with the force field developed. The force fields developed by AFM provide a bridge for computing ensemble properties of the reference electronic structure method. With MP2 and LMP2 as reference methods, the computed properties of the small molecular solutes are found to be in good agreement with experiments.Using isobaric Monte Carlo simulations, we map out the entire phase diagram of a system of hard cylindrical particles of length (L) and diameter (D) using an improved algorithm to identify the overlap condition between two cylinders. Both the prolate L/D > 1 and the oblate L/D 1 case, we find intermediate nematic N and smectic SmA phases in addition to a low density isotropic I and a high density crystal X phase with I-N-SmA and I-SmA-X triple points. An apparent columnar phase C is shown to be metastable, as in the case of spherocylinders. In the oblate L/D less then 1 case, we find stable intermediate cubatic (Cub), nematic (N), and columnar (C) phases with I-N-Cub, N-Cub-C, and I-Cub-C triple points. Comparison with previous numerical and analytical studies is discussed. The present study, accounting for the explicit cylindrical shape, paves the way to more sophisticated models with important biological applications, such as viruses and nucleosomes.When a polymer solution undergoes viscoelastic phase separation, the polymer-rich phase forms a network-like structure even if it is a minor phase. This unique feature is induced by polymer dynamics, which are constrained by the temporal entanglement of polymer chains. The fundamental mechanisms of viscoelastic phase separation have already been elucidated by theory and experiments over the past few decades; however, it is not yet well understood how viscoelastic phase separation occurs in multicomponent polymer solutions. Here, we construct a new viscoelastic phase separation model for ternary polymer solutions that consist of a polymer, solvent, and nonsolvent. Our simulation results reveal that a network-like structure is formed in the ternary bulk system through a phase separation mechanism similar to that observed in binary polymer solutions. A difference in dynamics is also found in that the solvent, whose affinity to the polymer is similar to that of the nonsolvent, moves freely between the polymer-rich and water-rich phases during phase separation. These findings are considered important for understanding the phase separation mechanism of ternary mixtures often used in the manufacture of polymeric separation membranes.The enhancement of surface diffusion (DS) over the bulk (DV) in metallic glasses (MGs) is well documented and likely to strongly influence the properties of glasses grown by vapor deposition. Here, we use classical molecular dynamics (MD) simulations to identify different factors influencing the enhancement of surface diffusion in MGs. WNK463 MGs have a simple atomic structure and belong to the category of moderately fragile glasses that undergo pronounced slowdown of bulk dynamics with cooling close to the glass transition temperature (Tg). We observe that DS exhibits a much more moderate slowdown compared to DV when approaching Tg, and DS/DV at Tg varies by two orders of magnitude among the MGs investigated. We demonstrate that both the surface energy and the fraction of missing bonds for surface atoms show good correlation to DS/DV, implying that the loss of nearest neighbors at the surface directly translates into higher mobility, unlike the behavior of network-bonded and hydrogen-bonded organic glasses. Fragility, a measure of the slowdown of bulk dynamics close to Tg, also correlates to DS/DV, with more fragile systems having larger surface enhancement of mobility. The deviations observed in the fragility-DS/DV relationship are shown to be correlated to the extent of segregation or depletion of the mobile element at the surface. Finally, we explore the relationship between the diffusion pre-exponential factor (D0) and the activation energy (Q) and compare it to a ln(D0)-Q correlation previously established for bulk glasses, demonstrating similar correlations from MD as in the experiments and that the surface and bulk have very similar ln(D0)-Q correlations.Computational schemes for comprehensive studies of molecular electron-attached states and the calculation of electron affinities (EAs) are formulated and implemented employing the intermediate state representation (ISR) formalism and the algebraic-diagrammatic construction approximation for the electron propagator (EA-ADC). These EA-ADC(n)/ISR(m) schemes allow for a consistent treatment of not only electron affinities and pole strengths up to third-order of perturbation theory (n = 3) but also one-electron properties of electron-attached states up to second order (m = 2). The EA-ADC/ISR equations were implemented in the Q-Chem program for Ŝz-adapted intermediate states, allowing also open-shell systems to be studied using unrestricted Hartree-Fock references. For benchmarking of the EA-(U)ADC/ISR schemes, EAs and dipole moments of various electron-attached states of small closed- and open-shell molecules were computed and compared to full configuration interaction data. As an illustrative example, EA-ADC(3)/ISR(2) has been applied to the thymine-thymine (6-4) DNA photolesion.A rovibrationally state-specific collision model for the O2(Σg-3)+O(P3) system is presented for direct simulation Monte Carlo, including rotation-vibration-translation energy transfer, exchange, dissociation, and recombination processes. The two-step binary collision approach is employed to model recombination reactions. Two available cross section databases by Andrienko/Boyd and Esposito/Capitelli are employed for the rovibrationally resolved model (rv-STS) and vibrationally resolved model (v-STS), respectively. The difference between rv-STS and v-STS comes from two contributions the multisurface factor of dissociation (fMS) and the rotational averaging process. The dissociation cross section with the constant fMS is typically larger than with the variable fMS, especially for the low vibrational energy states. On the other hand, the cross sections resulting from the rotationally averaged database are found to underpredict the dissociation rate coefficient at low temperatures. In the rovibrational heating case, the rv-STS predicts faster relaxation than the v-STS, which also shows a lower quasi-steady-state temperature than v-STS.
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