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This puts these patients at a higher risk of privacy issues due to re-identification. On the other hand, we observed that patients with premature ventricular contractions have an identification accuracy as low as 78.54%. selleck kinase inhibitor The identification rate for patients with a pacemaker is 80.2%.Clinical relevance-While ECG as a biometric can be a potentially useful technology, it also raises serious concerns regarding the privacy of cardiac patients. Especially, the ECG Identification algorithms empowered by deep learning can increase the risk of re-identification.Using smart wearable devices to monitor patients' electrocardiogram (ECG) for real-time detection of arrhythmias can significantly improve healthcare outcomes. Convolutional neural network (CNN) based deep learning has been used successfully to detect anomalous beats in ECG. However, the computational complexity of existing CNN models prohibits them from being implemented in low-powered edge devices. Usually, such models are complex with lots of model parameters which results in large number of computations, memory, and power usage in edge devices. Network pruning techniques can reduce model complexity at the expense of performance in CNN models. This paper presents a novel multistage pruning technique that reduces CNN model complexity with negligible loss in performance compared to existing pruning techniques. An existing CNN model for ECG classification is used as a baseline reference. At 60% sparsity, the proposed technique achieves 97.7% accuracy and an F1 score of 93.59% for ECG classification tasks. This is an improvement of 3.3% and 9% for accuracy and F1 Score respectively, compared to traditional pruning with fine-tuning approach. Compared to the baseline model, we also achieve a 60.4% decrease in run-time complexity.The abnormal pause or rate reduction in breathing is known as the sleep-apnea hypopnea syndrome and affects the quality of sleep of an individual. A novel method for the detection of sleep apnea events (pause in breathing) from peripheral oxygen saturation (SpO2) signals obtained from wearable devices is discussed in this paper. The paper details an apnea detection algorithm of a very high resolution on a per-second basis for which a 1-dimensional convolutional neural network- which we termed SomnNET- is developed. This network exhibits an accuracy of 97.08% and outperforms several lower resolution state-of-the-art apnea detection methods. The feasibility of model pruning and binarization to reduce the computational complexity is explored. The pruned network with 80% sparsity exhibited an accuracy of 89.75%, and the binarized network exhibited an accuracy of 68.22%. The performance of the proposed networks is compared against several state-of-the-art algorithms.Blind linear unmixing (BLU) methods allow the separation of multi and hyperspectral data into end-members and abundance maps in an unsupervised fashion. However, due to incident noise, the abundance maps can exhibit high presence of granularity. To address this problem, in this paper, we present a novel proposal for BLU that considers spatial coherence in the abundance estimations, through a total spatial variation component. The proposed BLU formulation is based on the blind end-member and abundance extraction perspective with total spatial variation (EBEAE-STV). In EBEAE-STV, internal abundances are added to incorporate the spatial coherence in the cost function, which is solved by a coordinates descent algorithm. The results with synthetic data show that the proposed algorithm can significantly decrease the granularity in the estimated abundances, and the estimation errors and computational times are lower compared to state of the art methodologies.Clinical relevance- The proper and robust estimation of end-members and their respective contributions (abundances) in multi-spectral and hyper-spectral images from the proposed EBEAE-STV methodology might provide useful information in several biomedical applications, such as chemometric analysis on different biological samples, tumor identification and brain tissue classification for hyper-spectral imaging, among others.Attention-deficit/hyperactivity disorder (ADHD) is a neurodevelopmental disorder that could persist into adulthood with known abnormalities in brain structure. Genetics also play an important role in the etiology of the disorder and could affect the disorder trajectory. In this study, we investigated the prediction power of brain image and genomic features for symptom change in 77 individuals with ADHD as part of NeuroIMAGE cohort. Gray matter components and working memory assessments at baseline, as well as gene scores of interest, were used to predict the changes in the two symptom domains inattentive and hyperactive/impulsive, an average of 4 years. A linear regression model coupled with various feature selection approaches, including leave-one-out-cross-validation (LOOCV), stability selection with resampling, and permutation tests, was implemented to mitigate the overtraining potential caused by small sample sizes. Results showed that traditional LOOCV overestimated the prediction power. We proposed a novel stability selection with the threshold set by permutation tests, which provided more objective assessment. Using our proposed procedure, we identified a statistical promising prediction model for inattention symptom change; the consistent correlation between predicted values and measured values during model training, validating and hold out testing (r=0.64, 0.53, 0.46, respectively), but the p value is not significant in the holdout test. The selected features include age, gray matter in the insula, genes OSBPL1A, CTNNB1, PRPSAP2, ACADM, and polygenic risk score of education attainment, which have been previously reported to be associated with ADHD. We speculate that significant associations may be observed with a large sample size.Cardiovascular Disease (CVD) is responsible for a large part of healthcare costs every year, but susceptibility to it is affected by complex biological and physiological variables including patients' genetics and lifestyles. There has not been much work to develop a framework that incorporates these important and clinically relevant risk factors into a comprehensive model for CVD research. Moreover, the data labeling required to do so, such as annotating gene functions, is an extremely challenging, tedious, and time-consuming process. In this work, our goal was to develop and validate a risk factor embedding model, which incorporates genotype, phenotype without pre-labeled information to identify various risk factors of CVD. We hypothesize that (1) the knowledge background that does not require data labeling could be gathered from published abstract data, (2) the phenotype, genotype risk factors could be represented in an embedding vector space. We collected 1,363,682 published abstracts from PubMed using the keyword "heart" and 19,264 human gene names, then trained our model using the collected abstracts. We evaluated our CVD risk factor identification model using both intrinsic and extrinsic evaluations for the intrinsic evaluation, we examined whether or not the captured top-10 words and genes have references related to the input query "myocardial infarction", as one of CVDs, and our model correctly identified them. For the extrinsic evaluation, we used our model to the dimensionality reduction task for classifications, and our method outperformed other popular methods. These results show the feasibility of our approach for disease-associated risk factors of CVD which incorporates genotype, phenotype.Clinical Relevance-Our model provides a comprehensive tool to incorporate various risk factors without any a priori data labeling knowledge for CVD. Our approach shows a potential to provide discovered knowledge that contributes to better understanding and treatment of CVD.Management of respiratory conditions relies on timely diagnosis and institution of appropriate management. Computerized analysis and classification of breath sounds has a potential to enhance reliability and accuracy of diagnostic modality while making it suitable for remote monitoring, personalized uses, and self-management uses. In this paper, we describe and compare sound recognition models aimed at automatic diagnostic differentiation of healthy persons vs patients with COPD vs patients with pneumonia using deep learning approaches such as Multi-layer Perceptron Classifier (MLPClassifier) and Convolutional Neural Networks (CNN).Clinical Relevance-Healthcare providers and researchers interested in the field of medical sound analysis, specifically automatic detection/classification of auscultation sound and early diagnosis of respiratory conditions may benefit from this paper.Accurate gait events detection from the video would be a challenging problem. However, most vision-based methods for gait event detection highly rely on gait features that are estimated using gait silhouettes and human pose information for accurate gait data acquisition. This paper presented an accurate, multi-view approach with deep convolutional neural networks for efficient and practical gait event detection without requiring additional gait feature engineering. Especially, we aimed to detect gait events from frontal views as well as lateral views. We conducted the experiments with four different deep CNN models on our own dataset that includes three different walking actions from 11 healthy participants. Models took 9 subsequence frames stacking together as inputs, while outputs of models were probability vectors of gait events toe-off and heel-strike for each frame. The deep CNN models trained only with video frames enabled to detect gait events with 93% or higher accuracy while the user is walking straight and walking around on both frontal and lateral views.Driven by the advancements of wearable sensors and signal processing algorithms, studies on continuous real-world monitoring are of major interest in the field of clinical gait and motion analysis. While real-world studies enable a more detailed and realistic insight into various mobility parameters such as walking speed, confounding and environmental factors might skew those digital mobility outcomes (DMOs), making the interpretation of results challenging. To consider confounding factors, context information needs to be included in the analysis. In this work, we present a context-aware mobile gait analysis system that can distinguish between gait recorded at home and not at home based on Bluetooth proximity information. The system was evaluated on 9 healthy subjects and 6 Parkinsons disease (PD) patients. The classification of the at home/not at home context reached an average F1-score of 98.2 ± 3.2 %. A context-aware analysis of gait parameters revealed different walking bout length distributions between the two environmental conditions. Furthermore, a reduction of gait speed within the at home context compared to walking not at home of 8.9 ± 9.4 % and 8.7 ±5.9 % on average for healthy and PD subjects was found, respectively. Our results indicate the influence of the recording environment on DMOs and, therefore, emphasize the importance of context in the analysis of continuous motion data. Hence, the presented work contributes to a better understanding of confounding factors for future real-world studies.
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