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Molecular systems are inherently probabilistic and operate in a noisy environment, yet, despite all these uncertainties, molecular functions are surprisingly reliable and robust. The principles used by natural systems to deal with noise are still not well understood, especially in a nonhomogeneous environment where molecules can diffuse across different compartments. In Selleckchem Tucatinib show that membrane transport mechanisms have very effective properties of noise reduction. In particular, we show that active transport mechanisms (those that can transport against a gradient of concentration by using energy or by means of the concentration gradient of other substances), such as symporters and antiporters, have surprising efficiency in noise reduction, which outperforms passive diffusion mechanisms and are well below Poisson levels. We link our results to the coupled transport of potassium, sodium, and glucose to show that the noise in internal glucose level can be greatly reduced. Our results show that compartmentalization can be a highly effective mechanism of noise reduction and suggests that membrane transport could give this extra benefit, contributing to the emergence of complex compartmentalization in eukaryotes.A method of data assimilation (DA) is employed to estimate electrophysiological parameters of neurons simultaneously with their synaptic connectivity in a small model biological network. The DA procedure is cast as an optimization, with a cost function consisting of both a measurement error and a model error term. An iterative reweighting of these terms permits a systematic method to identify the lowest minimum, within a local region of state space, on the surface of a nonconvex cost function. In the model, two sets of parameter values are associated with two particular functional modes of network activity simultaneous firing of all neurons and a pattern-generating mode wherein the neurons burst in sequence. The DA procedure is able to recover these modes if (i) the stimulating electrical currents have chaotic waveforms and (ii) the measurements consist of the membrane voltages of all neurons in the circuit. Further, this method is able to prune a model of unnecessarily high dimensionality to a representation that contains the maximum dimensionality required to reproduce the provided measurements. This paper offers a proof-of-concept that DA has the potential to inform laboratory designs for estimating properties in small and isolatable functional circuits.Biochemical oscillations are ubiquitous in nature and allow organisms to properly time their biological functions. In this paper, we consider minimal Markov state models of nonequilibrium biochemical networks that support oscillations. We obtain analytical expressions for the coherence and period of oscillations in these networks. These quantities are expected to depend on all details of the transition rates in the Markov state model. However, our analytical calculations reveal that driving the system out of equilibrium makes many of these details-specifically, the location and arrangement of the transition rates-irrelevant to the coherence and period of oscillations. This theoretical prediction is confirmed by excellent agreement with numerical results. As a consequence, the coherence and period of oscillations can be robustly maintained in the presence of fluctuations in the irrelevant variables. While recent work has established that increasing energy consumption improves the coherence of oscillations, our findings suggest that it plays the additional role of making the coherence and the average period of oscillations robust to fluctuations in rates that can result from the noisy environment of the cell.Direct observation of a rotating detonation engine combustion chamber has enabled the extraction of the kinematics of its detonation waves. These records exhibit a rich set of instabilities and bifurcations arising from the interaction of coherent wave fronts and global gain dynamics. We develop a model of the observed dynamics by recasting the Majda detonation analog as an autowave process. The solution fronts become attractors of the engine, i.e., mode-locked rotating detonation waves. We find that denotative energy release competes with dissipation and gain recovery to produce the observed dynamics and a bifurcation structure common to other driven-dissipative systems, such as mode-locked lasers.We study laminar chaos in an electronic experiment. A two-diode nonlinear circuit with delayed feedback shows chaotic dynamics similar to the Mackey-Glass or Ikeda delay systems. Clock modulation of a single delay line leads to a conservative variable delay, which with a second delay line is augmented to dissipative delays, leading to laminar chaotic regimes. We discuss the properties of this particular delay modulation and demonstrate experimental aspects of laminar chaos in terms of power spectra and return maps.An approach to obtain the structural properties of additive binary hard-sphere mixtures is presented. Such an approach, which is a nontrivial generalization of the one recently used for monocomponent hard-sphere fluids [S. Pieprzyk, A. C. Brańka, and D. M. Heyes, Phys. #link# Rev. E 95, 062104 (2017)2470-004510.1103/PhysRevE.95.062104], combines accurate molecular-dynamics simulation data, the pole structure representation of the total correlation functions, and the Ornstein-Zernike equation. A comparison of the direct correlation functions obtained with the present scheme with those derived from theoretical results stemming from the Percus-Yevick (PY) closure and the so-called rational-function approximation (RFA) is performed. The density dependence of the leading poles of the Fourier transforms of the total correlation functions and the decay of the pair correlation functions of the mixtures are also addressed and compared to the predictions of the two theoretical approximations. A very good overall agreement between the results of the present scheme and those of the RFA is found, thus suggesting that the latter (which is an improvement over the PY approximation) can safely be used to predict reasonably well the long-range behavior, including the structural crossover, of the correlation functions of additive binary hard-sphere mixtures.
Website: https://www.selleckchem.com/products/arry-380-ont-380.html
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