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The continual emergence of novel coronaviruses (CoV), such as severe acute respiratory syndrome-(SARS)-CoV-2, highlights the critical need for broadly reactive therapeutics and vaccines against this family of viruses. From a recovered SARS-CoV donor sample, we identify and characterize a panel of six monoclonal antibodies that cross-react with CoV spike (S) proteins from the highly pathogenic SARS-CoV and SARS-CoV-2, and demonstrate a spectrum of reactivity against other CoVs. Epitope mapping reveals that these antibodies recognize multiple epitopes on SARS-CoV-2 S, including the receptor-binding domain, the N-terminal domain, and the S2 subunit. Functional characterization demonstrates that the antibodies mediate phagocytosis-and in some cases trogocytosis-but not neutralization in vitro. When tested in vivo in murine models, two of the antibodies demonstrate a reduction in hemorrhagic pathology in the lungs. The identification of cross-reactive epitopes recognized by functional antibodies expands the repertoire of targets for pan-coronavirus vaccine design strategies.Knowledge of the epitopes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) targeted by T cells in recovered (convalescent) individuals is important for understanding T cell immunity against coronavirus disease 2019 (COVID-19). This information can aid development and assessment of COVID-19 vaccines and inform novel diagnostic technologies. Here, we provide a unified description and meta-analysis of SARS-CoV-2 T cell epitopes compiled from 18 studies of cohorts of individuals recovered from COVID-19 (852 individuals in total). Our analysis demonstrates the broad diversity of T cell epitopes that have been recorded for SARS-CoV-2. A large majority are seemingly unaffected by current variants of concern. We identify a set of 20 immunoprevalent epitopes that induced T cell responses in multiple cohorts and in a large fraction of tested individuals. The landscape of SARS-CoV-2 T cell epitopes we describe can help guide immunological studies, including those related to vaccines and diagnostics. A web-based platform has been developed to help complement these efforts.The astrocyte brain-type fatty-acid binding protein (Fabp7) circadian gene expression is synchronized in the same temporal phase throughout mammalian brain. Cellular and molecular mechanisms that contribute to this coordinated expression are not completely understood, but likely involve the nuclear receptor Rev-erbα (NR1D1), a transcriptional repressor. We performed ChIP-seq on ventral tegmental area (VTA) and identified gene targets of Rev-erbα, including Fabp7. We confirmed that Rev-erbα binds to the Fabp7 promoter in multiple brain areas, including hippocampus, hypothalamus, and VTA, and showed that Fabp7 gene expression is upregulated in Rev-erbα knock-out mice. Compared to Fabp7 mRNA levels, Fabp3 and Fabp5 mRNA were unaffected by Rev-erbα depletion in hippocampus, suggesting that these effects are specific to Fabp7. To determine whether these effects of Rev-erbα depletion occur broadly throughout the brain, we also evaluated Fabp mRNA expression levels in multiple brain areas, including cerebellum, cortex, hypothalamus, striatum, and VTA in Rev-erbα knock-out mice. While small but significant changes in Fabp5 mRNA expression exist in some of these areas, the magnitude of these effects are minimal to that of Fabp7 mRNA expression, which was over 6-fold across all brain regions. These studies suggest that Rev-erbα is a transcriptional repressor of Fabp7 gene expression throughout mammalian brain.Many papers have proposed forecasting models and some are accurate and others are not. Due to the debatable quality of collected data about COVID-19, this study aims to compare univariate time series models with cross-validation and different forecast periods to propose the best one. We used the data titled "Coronavirus Pandemic (COVID-19)" from "'Our World in Data" about cases for the period of 31 December 2019 to 21 November 2020. The Mean Absolute Percentage Error (MAPE) is computed per model to make the choice of the best fit. Among the univariate models, Error Trend Season (ETS), Exponential smoothing with multiplicative error-trend, and ARIMA; we got that the best one is ETS with additive error-trend and no season. The findings revealed that with the ETS model, we need at least 100 days to have good forecasts with a MAPE threshold of 5%.There are various fields are affected by the growth of data dimensionality. The major problems which are resulted from high dimensionality of data including high memory requirements, high computational cost, and low machine learning classifier performance. HO-3867 solubility dmso Therefore, proper selection of relevant features from the set of available features and the removal of irrelevant features will solve these problems. Therefore, to solve the feature selection problem, an improved version of Dragonfly Algorithm (DA) is proposed by combining it with Simulated Annealing (SA), where the improved algorithm named BDA-SA. To solve the local optima problem of DA and enhance its ability in selecting the best subset of features for classification problems, Simulated Annealing (SA) was applied to the best solution found by Binary Dragonfly algorithm in attempt to improve its accuracy. A set of frequently used data sets from UCI repository was utilized to evaluate the performance of the proposed FS approach. Results show that the proposed hybrid approach, named BDA-SA, has superior performance when compared to wrapper-based FS methods including a feature selection method based on the basic version of Binary Dragonfly Algorithm.
The online version contains supplementary material available at 10.1007/s42979-021-00687-5.
The online version contains supplementary material available at 10.1007/s42979-021-00687-5.The pandemic, originated by novel coronavirus 2019 (COVID-19), continuing its devastating effect on the health, well-being, and economy of the global population. A critical step to restrain this pandemic is the early detection of COVID-19 in the human body to constraint the exposure and control the spread of the virus. Chest X-Rays are one of the non-invasive tools to detect this disease as the manual PCR diagnosis process is quite tedious and time-consuming. Our intensive background studies show that, the works till now are not efficient to produce an unbiased detection result. In this work, we proposed an automated COVID-19 classification method, utilizing available COVID and non-COVID X-Ray datasets, along with High-Resolution Network (HRNet) for feature extraction embedding with the UNet for segmentation purposes. To evaluate the proposed method, several baseline experiments have been performed employing numerous deep learning architectures. With extensive experiment, we got a significant result of 99.26% accuracy, 98.
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