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Many patients with gout flares treated in the Emergency Department (ED) often do not receive optimal continuity of care after an ED visit. Thus, developing methods to identify patients with gout flares in the ED and referring them to appropriate outpatient gout care is required. While Natural Language Processing (NLP) has been used to detect gout flares retrospectively, it is much more challenging to identify patients prospectively during an ED visit where documentation is usually minimal. We annotate a corpus of ED triage nurse chief complaint notes for the presence of gout flares and implement a simple algorithm for gout flare ED alerts. We show that the chief complaint alone has strong predictive power for gout flares. We make available a de-identified version of this corpus annotated for gout mentions, which is to our knowledge the first free text chief complaint clinical corpus available.This study aimed at identifying the factors associated with neonatal mortality. We analyzed the Demographic and Health Survey (DHS) datasets from 10 Sub-Saharan countries. For each survey, we trained machine learning models to identify women who had experienced a neonatal death within the 5 years prior to the survey being administered. We then inspected the models by visualizing the features that were important for each model, and how, on average, changing the values of the features affected the risk of neonatal mortality. We confirmed the known positive correlation between birth frequency and neonatal mortality and identified an unexpected negative correlation between household size and neonatal mortality. We further established that mothers living in smaller households have a higher risk of neonatal mortality compared to mothers living in larger households; and that factors such as the age and gender of the head of the household may influence the association between household size and neonatal mortality.High quality patient care through timely, precise and efficacious management depends not only on the clinical presentation of a patient, but the context of the care environment to which they present. Understanding and improving factors that affect streamlined workflow, such as provider or department busyness or experience, are essential to improving these care processes, but have been difficult to measure with traditional approaches and clinical data sources. selleck chemicals llc In this exploratory data analysis, we aim to determine whether such contextual factors can be captured for important clinical processes by taking advantage of non-traditional data sources like EHR audit logs which passively track the electronic behavior of clinical teams. Our results illustrate the potential of defining multiple measures of contextual factors and their correlation with key care processes. We illustrate this using thrombolytic (tPA) treatment for ischemic stroke as an example process, but the measurement approaches can be generalized to multiple scenarios.Physicians collect data in patient encounters that they use to diagnose patients. This process can fail if the needed data is not collected or if physicians fail to interpret the data. Previous work in orofacial pain (OFP) has automated diagnosis from encounter notes and pre-encounter diagnoses questionnaires, however they do not address how variables are selected and how to scale the number of diagnoses. With a domain expert we extract a dataset of 451 cases from patient notes. We examine the performance of various machine learning (ML) approaches and compare with a simplified model that captures the diagnostic process followed by the expert. Our experiments show that the methods are adequate to making data-driven diagnoses predictions for 5 diagnoses and we discuss the lessons learned to scale the number of diagnoses and cases as to allow for an actual implementation in an OFP clinic.The aim of our study was to create a graph model for the description of LOINC® concepts. The main objective of the constructed structure is to facilitate the alignment of French local terminologies to LOINC. The process consisted of automatically incorporating the naming rules of LOINC labels, based on punctuation. We implemented these rules and applied them to the French variants of LOINC and then created attributes and concepts described with synonymous labels. When comparing the created attributes to the stated ones, the multiple mappings led to the identification of errors that must be corrected for improving the translation quality. These mappings are consecutive to semantic errors generated during the translation process. They mainly corresponded to misinterpretations of LOINC concepts and/or LOINC attributes.Machine Learning research applied to the medical field is increasing. However, few of the proposed approaches are actually deployed in clinical settings. One reason is that current methods may not be able to generalize on new unseen instances which differ from the training population, thus providing unreliable classifications. Approaches to measure classification reliability could be useful to assess whether to trust prediction on new cases. Here, we propose a new reliability measure based on the similarity of a new instance to the training set. In particular, we evaluate whether this example would be selected as informative by an instance selection method, in comparison with the available training set. We show that this method distinguishes reliable examples, for which we can trust the classifier's prediction, from unreliable ones, both on simulated data and in a real-case scenario, to distinguish tumor and normal cells in Acute Myeloid Leukemia patients.Acute lymphoblastic leukemia affects both children and adults. Rising costs of cancer care and patient burden contribute to the need to study factors influencing outcomes. This study explored the quality of datasets generated from a clinical research institution. The 'fit-for-use' of data prior to examining survival/complications was determined through a systematic approach guided by the Weiskopf et al. 3x3 Data Quality Assessment Framework. Constructs of completeness, correctness, and currency were explored for the data dimensions of patient, variables, and time. There were 11 types of data retrieved. Sufficient data points were found for patient and variable data in each dataset (≥70% of its cells filled with patient level data). Although there was concordance between variables, we found the distribution of lab values and death data to be incorrect. There were missing values for labs ordered and death dates. Our study showed that datasets retrieved can vary, even from the same institution.
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