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Good binding poses and affinities predicted by docking can be calculated accurately if proper care is taken. click here Accounting for the entropic penalty to the binding energy due to restriction of conformational freedom in flexible ligands on binding is computationally difficult but very important for obtaining reliable ranking of ligand binding affinities to specific protein targets.The high-performance computational techniques have brought significant benefits for drug discovery efforts in recent decades. One of the most challenging problems in drug discovery is the protein-ligand binding pose prediction. To predict the most stable structure of the complex, the performance of conventional structure-based molecular docking methods heavily depends on the accuracy of scoring or energy functions (as an approximation of affinity) for each pose of the protein-ligand docking complex to effectively guide the search in an exponentially large solution space. However, due to the heterogeneity of molecular structures, the existing scoring calculation methods are either tailored to a particular data set or fail to exhibit high accuracy. In this paper, we propose a convolutional neural network (CNN)-based model that learns to predict the stability factor of the protein-ligand complex and exhibits the ability of CNNs to improve the existing docking software. Evaluated results on PDBbind data set indicate that our approach reduces the execution time of the traditional docking-based method while improving the accuracy. Our code, experiment scripts, and pretrained models are available at https//github.com/j9650/MedusaNet.The creative integration of sp-hybridized carbon atoms into artificial carbon graphdiyne has led to graphdiyne with superior properties in terms of uniformly distributed pores, ambipolar carrier transport, natural bandgap, and broadband absorption. Consequently, graphdiyne, regarded as a promising carbon material, has garnered particular attention in light-matter interactions. Light-matter interactions play an important role in optical information technology and meet the increasing demand for various energy sources. Herein, the status and challenges in nonlinear photonic and optoelectronic applications of graphdiyne, which are still in the infancy stage, are summarized. Furthermore, the bottleneck and perspective of graphdiyne in these aspects are discussed. It is therefore anticipated that this review could promote the development of graphdiyne in photonic and optoelectronic fields.Graphene gas-barrier performance holds great interest from both scientific and technological perspectives. Using in situ synchrotron X-ray photoelectron spectroscopy, we demonstrate that chemical vapor-deposited monolayer graphene loses its gas-barrier performance almost completely when oxygen molecules are imparted with sub-electronvolt kinetic energy but retains its gas-barrier performance when the molecules are not energized. The permeation process is nondestructive. Molecular dynamics-based simulation suggests kinetic energy-mediated chemical reactions catalyzed by common graphene defects as a responsible mechanism.Aluminum-air batteries possess high theoretical specific capacities and energy densities. However, the desired application performance in the field of flexible electronics is limited by the rigid battery structure and slow kinetics of the oxygen reduction reaction (ORR). To address these issues, flexible, stretchable, and customizable aluminum-air batteries with a reference to honeycomb shape are composed of multilayer single battery units to achieve large scalability and start-stop control. The single aluminum-air battery combines MnO2 with N/S codoped graphene to improve the electrocatalytic activity. Benefiting from an efficient electrocatalyst and reasonable structural design, the single aluminum-air battery exhibits excellent electrochemical characteristics under deformation conditions with a high specific capacity and energy density (1203.2 mAh g-1 Al and 1630.1 mWh g-1 Al). Furthermore, the obtained honeycomb-shaped stretchable aluminum-air batteries maintain a stable output voltage over the 2500% stretching. More interestingly, the stretchable honeycomb structure not only can solve the start-stop control problem but also has the potential to reduce the self-corrosion in disposable metal-air batteries. In addition, owing to the customizable shapes and sizes, the honeycomb-shaped stretchable aluminum-air batteries facilitate the integrated application of flexible batteries in wearables.Scalable fabrication of perovskite solar cells (PSCs) with high reliability is one of the most pivotal concerns that must be addressed before they get into the photovoltaic (PV) market. Scaling large-area high-quality perovskite films is of great importance in this process. Here, gaseous therapy has been proposed for the post-treatment of perovskite films with high scalability and low cost. An inspiring evolvement from poor perovskite films to high quality ones is demonstrated under a joint treatment of methylamine gas and hot solvent vapors. The perovskite films are completely reconstructed and repaired regardless of the morphology of the original films. As a consequence, small-area (0.09 cm2) and large-area (4 cm2) PSCs based on the healed MAPbI3 films can afford J-V scanned efficiencies of 19.2 and 16.5% under a reverse sweep, respectively. Furthermore, stabilized power outputs of 18.5 and 15.2% are obtained from the small one and large one under continuous maximum power point tracking.Protein kinases C (PKCs) are a family of serine/threonine kinases involved in various cellular processes, including proliferation, differentiation, cell survival, and apoptosis. Here, we report the identification, structure-activity relationship (SAR), and 3D-QSAR studies of 69 natural indolocarbazoles, including 15 new compounds, from marine streptomyces strains. Interestingly, we found that the chair conformational isomer of 7-oxo-staurosporine (compound 15) inhibited PKCθ more potently than the corresponding boat isomer. An evaluation of kinase selectivity and antitumor efficacy revealed that 15 was a potent dual PKCθ/δ inhibitor and that it could efficiently inhibit tumor growth in pancreatic cancer (PC) by inducing cellular apoptosis and suppressing the NF-κB/p-P65 pathway. In addition, we demonstrated that overexpression of p-PKCδ and p-P65 was associated with poor survival rates in patients with PC, and p-PKCθ expression also showed significant positive correlations with p-PKCδ and p-P65 levels. Finally, the PC patient-derived xenograft model further confirmed the potential anti-PC efficacy of 15.
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