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In particular, all the eigenenergies of the Z(N) free-parafermionic models are also present in the related free-fermionic XY models. The correspondence is established via the identification of the characteristic polynomial, which fixes the eigenspectrum. In the Z(N) free-parafermionic models, the quasienergies obey an exclusion circle principle that is not present in the related N-multispin XY models.Thermodynamic uncertainty relations (TURs), originally discovered for classical systems, dictate the tradeoff between dissipation and fluctuations of irreversible current, specifying a minimal bound that constrains the two quantities. In a series of efforts to extend the relation to the one under more generalized conditions, it has been noticed that the bound is less tight in open quantum processes. To study the origin of the loose bounds, we consider an external field-driven transition dynamics of a two-level quantum system weakly coupled to the bosonic bath as a model of an open quantum system. The model makes it explicit that the imaginary part of quantum coherence, which contributes to dissipation to the environment, is responsible for loosening the TUR bound by suppressing the relative fluctuations in the irreversible current of transitions, whereas the real part of the coherence tightens it. Our study offers a better understanding of how quantum nature affects the TUR bound.We study the SIR (susceptible, infected, removed/recovered) model on directed graphs with heterogeneous transmission probabilities within the message-passing approximation. We characterize the percolation transition, predict cluster size distributions, and suggest vaccination strategies. All predictions are compared to numerical simulations on real networks. The percolation threshold that we predict is a rigorous lower bound to the threshold on real networks. click here For large, locally treelike networks, our predictions agree very well with the numerical data.We use state-of-the-art molecular dynamics simulations to study the effects of annealed disorder on the phase-separating kinetics and aging phenomena of a segregating binary fluid mixture. In the presence of disorder, we observe a dramatic slowing down in the phase separation dynamics. The domain growth follows the power law with a disorder-dependent exponent. Due to the energetically favorable positions, the domain boundary roughens, which modifies the correlation function and structure factor to a non-Porod behavior. The correlation function and structure factor provide clear evidence that superuniversality does not hold in our system. The role of annealed disorder on the nonequilibrium aging dynamics is studied qualitatively by computing the two-time order-parameter autocorrelation function. The decay of the correlation function slows down significantly with the disorder. This quantity exhibits scaling laws with respect to the ratio of the domain length at the observation time and the age of the system. We find the scaling laws hold good for the disordered system and are therefore robust and generic to such segregating fluid mixtures.The mechanisms by which an organ regulates its growth are not yet fully understood, especially when the cells are closely packed as in epithelial tissues. We explain growth arrest as a collective dynamical transition in coupled oscillators on disordered lattices. As the cellular morphologies become homogeneous over the course of development, the signals induced by cell-cell contact increase beyond a critical value that triggers coordinated cessation of the cell-cycle oscillators driving cell division. Thus, control of cell proliferation is causally related to the geometry of cellular packing.Several studies on brain signals suggested that bottom-up and top-down influences are exerted through distinct frequency bands among visual cortical areas. It was recently shown that theta and gamma rhythms subserve feedforward, whereas the feedback influence is dominated by the alpha-beta rhythm in primates. A few theoretical models for reproducing these effects have been proposed so far. Here we show that a simple but biophysically plausible two-network motif composed of spiking-neuron models and chemical synapses can exhibit feedforward and feedback influences through distinct frequency bands. Different from previous studies, this kind of model allows us to study directed influences not only at the population level, by using a proxy for the local field potential, but also at the cellular level, by using the neuronal spiking series.We study continuations of topological edge states in the Su-Schrieffer-Heeger model with on-site cubic (Kerr) nonlinearity, which is a 1D nonlinear photonic topological insulator (TI). Based on the topology of the underlying spatial dynamical system, we establish the existence of nonlinear edge states (edge solitons) for all positive energies in the topological band gap. We discover that these edge solitons are stable at any energy when the ratio between the weak and strong couplings is below a critical value. Above the critical coupling ratio, there are energy intervals where the edge solitons experience an oscillatory instability. Though our paper focuses on a photonic system, we also discuss the broader relevance of our methods and results to 1D nonlinear mechanical TIs.The time taken by a random variable to cross a threshold for the first time, known as the first passage time, is of interest in many areas of sciences and engineering. Conventionally, there is an implicit assumption that the notional "sensor" monitoring the threshold crossing event is always active. In many realistic scenarios, the sensor monitoring the stochastic process works intermittently. Then, the relevant quantity of interest is the first detection time, which denotes the time when the sensor detects the random variable to be above the threshold for the first time. In this Letter, a birth-death process monitored by a random intermittent sensor is studied for which the first detection time distribution is obtained. In general, it is shown that the first detection time is related to and is obtainable from the first passage time distribution. Our analytical results display an excellent agreement with simulations. Furthermore, this framework is demonstrated in several applications-the susceptible infected susceptible compartmental and logistic models and birth-death processes with resetting. Finally, we solve the practically relevant problem of inferring the first passage time distribution from the first detection time.We start from the theory of random point processes to derive n-point coupled master equations describing the continuous dynamics of discrete variables in random graphs. These equations constitute a hierarchical set of approximations that generalize and improve the cavity master equation (CME), a recently obtained closure for the usual master equation representing the dynamics. Our derivation clarifies some of the hypotheses and approximations that originally led to the CME, considered now as the first order of a more general technique. We tested the scheme in the dynamics of three models defined over diluted graphs the Ising ferromagnet, the Viana-Bray spin-glass, and the susceptible-infectious-susceptible model for epidemics. In the first two, the equations perform similarly to the best-known approaches in literature. In the latter, they outperform the well-known pair quenched mean-field approximation.The thermodynamic uncertainty relation (TUR) provides a stricter bound for entropy production (EP) than that of the thermodynamic second law. This stricter bound can be utilized to infer the EP and derive other tradeoff relations. Though the validity of the TUR has been verified in various stochastic systems, its application to general Langevin dynamics has not been successfully unified, especially for underdamped Langevin dynamics, where odd parity variables in time-reversal operation such as velocity get involved. Previous TURs for underdamped Langevin dynamics are neither experimentally accessible nor reduced to the original form of the overdamped Langevin dynamics in the zero-mass limit. Here, we find a TUR for underdamped Langevin dynamics with an arbitrary time-dependent protocol, which is operationally accessible when all mechanical forces are controllable. We show that the original TUR is a consequence of our underdamped TUR in the zero-mass limit. This indicates that the TUR formulation presented here can be regarded as the universal form of the TUR for general Langevin dynamics.Vital for a variety of industries, colloids also serve as an excellent model to probe phase transitions at the individual particle level. Despite extensive studies, origins of the glass transition in hard-sphere colloids discovered about 30 y ago remain elusive. Results of our numerical simulations and asymptotic analysis suggest that cessation of long-time particle diffusivity does not suppress crystallization of a metastable liquid-phase hard-sphere colloid. Once a crystallite forms, its growth is then controlled by the particle diffusion in the depletion zone surrounding the crystallite. Using simulations, we evaluate the solid-liquid interface mobility from data on colloidal crystallization in terrestrial and microgravity experiments and demonstrate that there is no drastic difference between the respective mobility values. The insight into the effect of vanishing particle mobility and particle sedimentation on crystallization of colloids will help engineer colloidal materials with controllable structure.Recently, it has been shown that the long coiled-coil membrane tether protein early endosome antigen 1 (EEA1) switches from a rigid to a flexible conformation upon binding of a signaling protein to its free end. This flexibility switch represents a motorlike activity, allowing EEA1 to generate a force that moves vesicles closer to the membrane they will fuse with. It was hypothesized that the binding-induced signal could propagate along the coiled coil and lead to conformational changes through the localized domains of the protein chain that deviate from a perfect coiled-coil structure. To elucidate, if upon binding of a single protein the corresponding mechanical signal could propagate through the whole 200-nm-long chain, we propose a simplified description of the coiled coil as a one-dimensional Frenkel-Kontorova chain. Using numerical simulations, we find that an initial perturbation of the chain can propagate along its whole length in the presence of thermal fluctuations. This may enable the change of the configuration of the entire molecule and thereby affect its stiffness. Our work sheds light on intramolecular communication and force generation in long coiled-coil proteins.Fractional Brownian motion is a non-Markovian Gaussian process indexed by the Hurst exponent H∈(0,1), generalizing standard Brownian motion to account for anomalous diffusion. Functionals of this process are important for practical applications as a standard reference point for nonequilibrium dynamics. We describe a perturbation expansion allowing us to evaluate many nontrivial observables analytically We generalize the celebrated three arcsine laws of standard Brownian motion. The functionals are (i) the fraction of time the process remains positive, (ii) the time when the process last visits the origin, and (iii) the time when it achieves its maximum (or minimum). We derive expressions for the probability of these three functionals as an expansion in ɛ=H-1/2, up to second order. We find that the three probabilities are different, except for H=1/2, where they coincide. Our results are confirmed to high precision by numerical simulations.
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