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Piwi-interacting RNAs (piRNAs) are a distinct sub-class of small non-coding RNAs that are mainly responsible for germline stem cell maintenance, gene stability, and maintaining genome integrity by repression of transposable elements. piRNAs are also expressed aberrantly and associated with various kinds of cancers. To identify piRNAs and their role in guiding target mRNA deadenylation, the currently available computational methods require urgent improvements in performance. To facilitate this, we propose a robust predictor based on a lightweight and simplified deep learning architecture using a convolutional neural network (CNN) to extract significant features from raw RNA sequences without the need for more customized features. The proposed model's performance is comprehensively evaluated using k-fold cross-validation on a benchmark dataset. The proposed model significantly outperforms existing computational methods in the prediction of piRNAs and their role in target mRNA deadenylation. In addition, a user-friendly and publicly-accessible web server is available at http//nsclbio.jbnu.ac.kr/tools/2S-piRCNN/.Fog removal from an image is an active research topic in computer vision. However, current literature is weak in the following two areas which in many ways are hindering progress for developing defogging algorithms. First, there is no true real-world and naturally occurring foggy image datasets suitable for developing defogging models. Second, there is no suitable mathematically simple and easy to use image quality assessment (IQA) methods for evaluating the visual quality of defogged images. We address these two aspects in this paper. We first introduce a new foggy image dataset called multiple real-world foggy image dataset (MRFID). MRFID contains foggy and clear images of 200 outdoor scenes. For each scene, one clear image and 4 foggy images of different densities defined as slightly foggy, moderately foggy, highly foggy, and extremely foggy, are manually selected from images taken from these scenes over the course of one calendar year. We then process the foggy images of MRFID using 16 defogging methods to obtain 12,800 defogged images (DFIs) and perform a comprehensive subjective evaluation of the visual quality of the DFIs. Through collecting the mean opinion score (MOS) of 120 subjects and evaluating a variety of fog-relevant image features, we have developed a new Fog-relevant Feature based SIMilarity index (FRFSIM) for assessing the visual quality of DFIs. https://www.selleckchem.com/products/gc376-sodium.html We present extensive experimental results to show that our new visual quality assessment measure, the FRFSIM, is more consistent with the MOS than other IQA methods and is therefore more suitable for evaluating defogged images than other state-of-the-art IQA methods. Our dataset and relevant code are available at http//www.vistalab.ac.cn/MRFID-for-defogging/.
Sweat secretions lead to variations in skin conductance (SC) signal. The relatively fast variation of SC, called the phasic component, reflects sympathetic nervous system activity. The slow variation related to thermoregulation and general arousal is known as the tonic component. It is challenging to decompose the SC signal into its constituents to decipher the encoded neural information related to emotional arousal.
We model the phasic component using a second-order differential equation representing the diffusion and evaporation processes of sweating. We include a sparse impulsive neural signal that stimulates the sweat glands for sweat production. We model the tonic component with several cubic B-spline functions. We formulate an optimization problem with physiological priors on system parameters, a sparsity prior on the neural stimuli, and a smoothness prior on the tonic component. Finally, we employ a generalized-cross validation-based coordinate descent approach to balance among the smoothness of the tonic component, the sparsity of the neural stimuli, and the residual.
We illustrate that we can successfully recover the unknowns separating both tonic and phasic components from both experimental and simulated data (with R
> 0.95). Further, we successfully demonstrate our ability to automatically identify sparsity level for the neural stimuli and smoothness level for the tonic component.
Our generalized-cross-validation-based novel method for SC signal decomposition successfully addresses previous challenges and retrieves a physiologically plausible solution.
Accurate decomposition of SC could potentially improve cognitive stress tracking in patients with mental disorders.
Accurate decomposition of SC could potentially improve cognitive stress tracking in patients with mental disorders.The ventral posterior hypothalamus (VPH) is an anatomically complex brain region implicated in arousal, reproduction, energy balance, and memory processing. However, neuronal cell type diversity within the VPH is poorly understood, an impediment to deconstructing the roles of distinct VPH circuits in physiology and behavior. To address this question, we employed a droplet-based single-cell RNA sequencing (scRNA-seq) approach to systematically classify molecularly distinct cell populations in the mouse VPH. Analysis of >16,000 single cells revealed 20 neuronal and 18 non-neuronal cell populations, defined by suites of discriminatory markers. We validated differentially expressed genes in selected neuronal populations through fluorescence in situ hybridization (FISH). Focusing on the mammillary bodies (MB), we discovered transcriptionally-distinct clusters that exhibit neuroanatomical parcellation within MB subdivisions and topographic projections to the thalamus. This single-cell transcriptomic atlas of VPH cell types provides a resource for interrogating the circuit-level mechanisms underlying the diverse functions of VPH circuits.
Several studies addressed the role of testicular sperm aspiration with intracytoplasmic sperm injection (ICSI) in azoospermic men but few have included non- azoospermic men. The aim of this study was to evaluate testicular sperm aspiration (TESA) sperm retrieval rates and ICSI outcomes in men with severe oligozoospermia.
Data were collected retrospectively from 88 consecutive, non-azoospermic, infertile men with idiopathic severe oligozoospermia who underwent TESA between January 2011 and January 2018. Patients were categorized into four groups according to sperm concentration <5 and >1 million/ml (group 1), <1 and > 0.1 million/ml (group 2), <0.1 million/ml (group 3) and cryptozoospermia (group 4).
Mean male age was 37±7 years and the mean female age was 33±4 years. Sperm was recovered successfully in 90% (79/88) of the men overall and in 100% (30/30) of the men in group 1, 97% (29/30) of the men in group 2, 88% (15/17) of the men in group 3, and 45% (5/11) of the men in group 4. Most (65%, 57/88) of the couples had an embryo transfer (ET). The overall clinical pregnancy rate per ET was 46% (26/57). The clinical pregnancy rates (per ET) were 43% (9/21) in group 1, 65% (13/20) in group 2, 36% (4/11) in group 3 and 0% (0/5) in group 4.
Our data indicate TESA allows for high sperm retrieval rates and acceptable ICSI pregnancy rates in men with severe oligozoospermia. However, in our experience, TESA sperm retrieval rates and ICSI outcomes are poor in cryptozoospermic men.
Our data indicate TESA allows for high sperm retrieval rates and acceptable ICSI pregnancy rates in men with severe oligozoospermia. However, in our experience, TESA sperm retrieval rates and ICSI outcomes are poor in cryptozoospermic men.
We sought to review outcomes of urethrovaginal fistula (UVF) repair, with or without concurrent fascial sling placement.
All patients diagnosed with UVF at our center from 1988-2017 were included in this study. Patient charts were reviewed from a prospectively kept fistula database, and patient characteristics and surgical outcomes were described. Descriptive statistics were applied to compare complication rates between patients with or without fascial sling placement at the time of UVF repair.
A total of 41 cases of UVF were identified, all of which underwent surgical repair. Median age at diagnosis was 49 years (interquartile range [IQR] 35-62). All patients had undergone pelvic surgery. UVF etiology was secondary to stress urinary incontinence (SUI) surgery in 17 patients (41%) and urethral diverticulum repair in seven patients (17%). The most common presenting symptom was continuous incontinence in 19 patients (46%). Nineteen patients had a fascial sling placed at the time of surgery (46%), with no significant difference in complication rates (26% vs. 23%, p=0.79). Two patients had Clavien-Dindo grade I complications (5%) and one had a grade III complication (2%). Four patients had long-term complications (10%), including urinary retention, chronic pain, and urethral stricture. Two patients had UVF recurrence (5%). Median followup after surgery was 21 months (IQR 4-72).
UVF should be suspected in patients with continuous incontinence following a surgical procedure. Most UVF surgical repairs are successful and can be done with concurrent placement of a fascial sling.
UVF should be suspected in patients with continuous incontinence following a surgical procedure. Most UVF surgical repairs are successful and can be done with concurrent placement of a fascial sling.
Fournier's gangrene (FG) is a necrotizing infection of the genitalia. Time from to surgical intervention is a critical determinant of prognosis. We sought to investigate whether patients from rural locations have worse clinical outcomes given distance from a tertiary center.
The Manitoba Intensive Care Unit (ICU) registry includes patients who have been admitted into ICUs across Manitoba. We identified patients admitted with FG from February 1999 to October 2019. Age, gender, Charlson comorbidity index (CCI), presence of colostomy and scrotal debridement, length of stay (LOS), and mortality outcomes were obtained. Patients were categorized as being rural or urban.
From 1999-2019, a total of 79 patients were admitted with FG. The median age was 60 years [interquartile range [IQR] 48-67). The mortality rate during hospitalization was 16.5%. There was no statistically significant difference in the number of deaths for patients from urban vs. rural dwellings (9/47 [19.1%] vs. 4/32 [12.5%], p=0.434]. A comparison of the 66 (83.5%) patients that survived and the 13 (16.5%) that died during ICU hospitalization demonstrated no difference in age, gender, CCI, presence of colostomy, and rates of scrotal re-debridement (p>0.05). Multivariable analysis demonstrated that living in a rural area was not associated with increased mortality (odds ratio 0.64, 95% confidence interval 00.16-2.57, p=0.527).
Location of residence was not predictive of death from FG. In addition, baseline characteristics such as age, gender, CCI, surgical interventions, or LOS were not found to be associated with mortality.
Location of residence was not predictive of death from FG. In addition, baseline characteristics such as age, gender, CCI, surgical interventions, or LOS were not found to be associated with mortality.
Historically, staging and treatment for upper tract urothelial carcinoma were extrapolated from bladder urothelial carcinoma literature. However, embryological, genetic, and anatomical differences exist between them. We sought to explore the relationship between location of urothelial cancer and overall survival (OS).
Data was culled from the National Cancer Database from 2004-2015. Patients with pT2-pT4 treated with definitive surgery were included; those with metastatic disease or who received neoadjuvant or adjuvant treatment were excluded. Patients were stratified by tumor location and pathological stage. The primary outcome was OS. Secondary outcomes were predictors of mortality in each pT stage stratum.
A total of 11 330 patients with bladder, 954 patients with ureteral, and 1943 patients with renal pelvis urothelial carcinoma were analyzed. Mean followup was 43.3, 39.4, and 41.4 months for bladder, ureteral, and renal pelvis, respectively. On univariable analysis, ureteral pT2 was associated with worse OS compared to both bladder (61.
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