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T cell recognition of a cognate peptide-major histocompatibility complex (pMHC) presented on the surface of infected or malignant cells is of the utmost importance for mediating robust and long-term immune responses. Accurate predictions of cognate pMHC targets for T cell receptors would greatly facilitate identification of vaccine targets for both pathogenic diseases and personalized cancer immunotherapies. Predicting immunogenic peptides therefore has been at the center of intensive research for the past decades but has proven challenging. Although numerous models have been proposed, performance of these models has not been systematically evaluated and their success rate in predicting epitopes in the context of human pathology has not been measured and compared. In this study, we evaluated the performance of several publicly available models, in identifying immunogenic CD8+ T cell targets in the context of pathogens and cancers. We found that for predicting immunogenic peptides from an emerging virus such an unsolved; thus, we hope our work will guide users and model developers regarding potential pitfalls and unsettled questions in existing immunogenicity predictors.Cancer is largely a disease of the tumor cell genome. As a result, the majority of genetics research in oncology has concentrated on the role of tumor somatic mutations, as well as inherited risk variants, in disease susceptibility and response to targeted treatments. The advent and success of cancer immunotherapies, however, have opened new perspectives for the investigation of the role of inherited genetic variation in codetermining outcome and safety. It is increasingly likely that the entirety of germline genetic variation involved in regulating immune responses accounts for a significant fraction of the observed variability in responses to cancer immunotherapies. Although germline genetic data from patients treated with cancer immunotherapies are still scarce, this line of research benefits from a vast body of knowledge derived from studies into autoimmune and infectious disease phenotypes, thus not requiring a start from a blank slate. Here, we discuss how a thorough investigation of genomic variation relevant for individuals' variability in (auto)immune responses can contribute to the discovery of novel treatment approaches and drug targets, and yield predictive biomarkers to stratify cancer patient populations in precision and personalized medicine settings.
The low acceptance rate of continuous positive airway pressure therapy in postoperative patients with untreated obstructive sleep apnea (OSA) indicates the necessity for development of an alternative postoperative airway management strategy. learn more The authors considered whether the combination of high-flow nasal cannula and upper-body elevation could improve postoperative OSA.
This nonblinded randomized crossover study performed at a single university hospital investigated the effect on a modified apnea hypopnea index, based exclusively on the airflow signal without arterial oxygen saturation criteria (flow-based apnea hypopnea index, primary outcome), of high-flow nasal cannula (20 l · min-1 with 40% oxygen concentration) with and without upper-body elevation in patients with moderate to severe OSA. Preoperative sleep studies were performed at home (control, no head-of-bed elevation) and in hospital (30-degree head-of-bed elevation). On the first and second postoperative nights, high-flow nasal cannula was apperity and nocturnal hypoxemia, suggesting a role for it as an alternate postoperative airway management strategy.
Plasmonic nanomaterials have become an integral part of numerous technologies, where they provide important functionalities spanning from extraction and harvesting of light in thin film optical devices to probing of molecular species and their interactions on biochip surfaces. More recently, we witness increasing research efforts devoted to a new class of plasmonic nanomaterials that allow for on-demand tuning of their properties by combining metallic nanostructures and responsive hydrogels. This review addresses this recently emerged vibrant field, which holds potential to expand the spectrum of possible applications and deliver functions that cannot be achieved by separate research in each of the respective fields. It aims at providing an overview of key principles, design rules, and current implementations of both responsive hydrogels and metallic nanostructures. We discuss important aspects that capitalize on the combination of responsive polymer networks with plasmonic nanostructures to perform rapid mechanical actuation and actively controlled nanoscale confinement of light associated with resonant amplification of its intensity. The latest advances towards the implementation of such responsive plasmonic nanomaterials are presented, particularly covering the field of plasmonic biosensing that utilizes refractometric measurements as well as plasmon-enhanced optical spectroscopy readout, optically driven miniature soft actuators, and light-fueled micromachines operating in an environment resembling biological systems.
Reliable markers to predict the response to neoadjuvant chemoradiotherapy (nCRT) in locally advanced rectal cancer (LARC) are lacking. We aimed to assess the ability of 18F-FDG PET/MRI to predict response to nCRT among patients undergoing curative-intent surgery.
Patients with histological-confirmed LARC who underwent curative-intent surgery following nCRT and restaging with 18F-FDG PET/MRI were included. Statistical correlation between radiomic features extracted in PET, apparent diffusion coefficient (ADC) and T2w images and patients' histopathologic response to chemoradiotherapy using a multivariable logistic regression model ROC-analysis.
Overall, 50 patients were included in the study. A pathological complete response was achieved in 28.0% of patients. Considering second-order textural features, nine parameters showed a statistically significant difference between the two groups in ADC images, six parameters in PET images and four parameters in T2w images. Combining all the features selected for the three techniques in the same multivariate ROC curve analysis, we obtained an area under ROC curve of 0.863 (95% CI, 0.760-0.966), showing a sensitivity, specificity and accuracy at the Youden's index of 100% (14/14), 64% (23/36) and 74% (37/50), respectively.
PET/MRI texture analysis seems to represent a valuable tool in the identification of rectal cancer patients with a complete pathological response to nCRT.
PET/MRI texture analysis seems to represent a valuable tool in the identification of rectal cancer patients with a complete pathological response to nCRT.Studies on the reactivity of zinc alkyl compounds towards SO2 are relatively less explored than either oxygenation or hydrolysis reactions. We report on the environmentally friendly and efficient syntheses of a homologous series of [(RSO2)ZnR]n complexes from reactions involving homoleptic R2Zn (R = Me, tBu, Ph) compounds and SO2. Diffusion ordered spectroscopy experiments indicate that the resulting compounds predominately occur as solvated dimers, [(RSO2)ZnR(THF)]2, in THF solution irrespective of the character of the group bonded to the zinc centres. In turn, these organozinc sulfinates exhibit structurally diversified molecular and supramolecular arrangements in the solid state, as evidenced by single-crystal X-ray diffraction studies. The methyl compound crystallises as a one-dimensional polymer, [(MeSO2)ZnMe]n, and the use of tBu2Zn and Ph2Zn leads to molecular aggregates, a tetramer [(tBuSO2)ZntBu]4, and a solvated [(PhSO2)ZnPh]2·2THF dimer, respectively. In addition, new theoretical insights have been gained by modelling the direct trapping of homoleptic organozinc compounds with SO2 using DFT calculations.Glycine, alanine, serine, and threonine are essential amino acids originating from biological activities. These substances can be emitted into the atmosphere directly. In the present study, the aqueous phase reaction kinetics of hydroxyl radicals (˙OH) with the four amino acids is investigated using the competition kinetics method under controlled temperature and pH conditions. The following T-dependent Arrhenius expressions are derived for the ˙OH reactions with glycine, k(T, H2A+) = (9.1 ± 0.3) × 109 × exp[(-2360 ± 230 K)/T], k(T, HA±) = (1.3 ± 0.1) × 1010 × exp[(-2040 ± 240 K)/T]; alanine, k(T, H2A+) = (1.4 ± 0.1) × 109 × exp[(-1120 ± 320 K)/T], k(T, HA±) = (5.5 ± 0.2) × 109 × exp[(-1300 ± 200 K)/T]; serine, k(T, H2A+) = (1.1 ± 0.1) × 109 × exp[(-470 ± 150 K)/T], k(T, HA±) = (3.9 ± 0.1) × 109 × exp[(-720 ± 130 K)/T]; and threonine, k(T, H2A+) = (5.0 ± 0.1) × 1010 × exp[(-1500 ± 100 K)/T], k(T, HA±) = (3.3 ± 0.1) × 1010 × exp[(-1320 ± 90 K)/T] (in units of L mol-1 s-1). The energy barriers of the ˙OH-induced H atom abstractions were simulated by the density functional theory (DFT) calculation performed with GAUSSIAN using the method of M06-2X and the basis set of 6-311++G(3df,2p). According to the calculation results, the -COOH and -NH3+ groups with strong negative inductive effects increase the energy barriers and thus decrease the ˙OH reaction rate constants. In contrast, the presence of a -OH or -CH3 group with weak negative or positive inductive effects can reduce energy barriers and hence increase the ˙OH reaction rate constants. To improve the previous structure-activity relationship, the contribution factors of -NH3+ at Cα-atom and Cβ-atom are determined as 0.07 and 0.15, respectively. Aqueous phase ˙OH oxidation acts as an important sink of the amino acids in the atmosphere, and can be accurately described by the obtained Arrhenius expressions under atmospheric conditions.Isolated right ventricular failure presents a rare pathology and heart transplantation remains the treatment of choice. Because of the shortage of donor organs, alternative treatment options are required. However, current continuous-flow ventricular assist devices are designed and approved only for left ventricular support and right ventricular implantation usually presents a procedure of last resort. Herein, we present a successful implantation of the HeartMate 3 for isolated right ventricular support as destination therapy in a patient suffering from late-onset arrhythmogenic right ventricular cardiomyopathy.Many patients with severe traumatic brain injuries (TBIs) undergo withdrawal of life-sustaining therapies (WLSTs) or transition to comfort measures, but noninjury factors that influence this decision have not been well characterized. We hypothesized that WLST would be associated with institutional and geographic noninjury factors. All patients with a head Abbreviated Injury Scale score ≥3 were identified from 2016 Trauma Quality Improvement Program data. We analyzed factors that might be associated with WLST, including procedure type, age, sex, race, insurance, Glasgow Coma Scale score, mechanism of injury, geographic region, and institutional size and teaching status. Adjusted logistic regression was performed to examine factors associated with WLST. Sixty-nine thousand fifty-three patients were identified 66% male, 77% with isolated TBI, and 7.8% had WLST. The median age was 56 years (34-73). A positive correlation was found between increasing age and WLST. Women were less likely to undergo WLST than men (odds ratio 0.
Homepage: https://www.selleckchem.com/products/didox.html
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