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pertussis strain Tohama and stored in suspension in saline solution. However, they were not observed in the PT samples produced from stain CS and stored in powders. Carbamylation (Arg) on multiple sites (in S3, S4 and S5) was observed in the PT produced from 5th generation strain CS of B. pertussis. The high abundance ratio of carbamylation modification was potentially a negative effect on the detoxification of PT, since unmodified Lys was the active site for detoxification. The results obtained in this study provide information for making protection strategies against PTMs in pertussis vaccine in manufacture and storage.Currently, there are not many in-depth studies focusing on the protein analysis of antioxidants involved in the calcification of the femoral artery. In this context, this study aimed to increase the knowledge of the molecular redox mechanisms involved in this process. Samples from calcified femoral artery sections of seven patients diagnosed with type 2 diabetes (T2D) and critical ischemia were analyzed. The isolated proteins were identified using liquid chromatography and mass-mass spectrometry and were used to generate a protein-protein interaction (PPI) network. Subsequently, highly interconnected regions within the PPI network were identified to obtain a representative module linked to oxidative stress. The proteins of this module with a higher degree of centrality (hubs) were selected to validate them by datamining, transcriptomic and proteomic assays. The analysis of modules of the femoral PPI network showed a module with mainly antioxidant function in which superoxide dismutase 2 (SOD2) was reported as the most important hub. SOD2 was validated at transcriptomic and proteomic level and confirmed by datamining. These results indicate that SOD activity is highly linked to the atherosclerotic process. We suggest that SOD2 could be a potential therapeutic target to prevent the calcification of the femoral artery. The maintenance of optimal SOD2 levels and its cofactors could be used as a preventive strategy for vascular calcification and the related cardiovascular complications in T2D patients.Recent advances in genomics have uncovered the tremendous diversity and richness of microbial ecosystems. New functional genomics methods are now needed to probe gene function in high-throughput and provide mechanistic insights. Here, we review how the CRISPR toolbox can be used to inactivate, repress or overexpress genes in a sequence-specific manner and how this offers diverse attractive solutions to identify gene function in high-throughput. Developed both in eukaryotes and prokaryotes, CRISPR screening technologies have already provided meaningful insights in microbiology and host-pathogen interactions. In the era of microbiomes, the versatility and the functional diversity of CRISPR-derived tools has the potential to significantly improve our understanding of microbial communities and their interaction with the host.Heterotrophic bacteria grow and divide rapidly when resources are abundant. Yet resources are finite, and environments fluctuate, so bacteria need strategies to survive when nutrients become scarce. In fact, many bacteria spend most of their time in such conditions of nutrient limitation, and hence they need to optimise gene regulation and protein biosynthesis during growth arrest. An optimal strategy in these conditions must mitigate the challenges and risks of making new proteins, while the cell is severely limited for energy and substrates. Recently, ribosome abundance and activity were measured in these conditions, revealing very low amounts of new protein synthesis, which is nevertheless vital for survival. The underlying mechanisms are only now starting to be explored. Improving our understanding of the regulation of protein production during bacterial growth arrest could have important implications for a wide range of challenges, including the identification of new targets for antibiotic development.The oil production by the natural energy in oil reservoirs is decreasing gradually. Only 25-30% of the world's reservoirs can be produced naturally, and different methods are employed to recover the remaining oil. The use of surfactants is one of the promising methods for unlocking the residual oil after natural depletion. In such a method, one of the main challenges is to study how surfactant, oil, and water interact and how porous media affect these interactions. Molecular dynamics (MD) simulation provides an opportunity to gain insights into this challenge. selleckchem MD simulation can be used to study interactions between surfactant, oil, and water statically and dynamically in porous media. This paper presents a comprehensive review of interactions between surfactants and fractions of oil/heavy oil, including asphaltene, resin, aromatics, and saturates. Also, it explains the probable mechanisms of oil detachment from reservoir rock in the presence of surfactants. A thorough grasp of molecular interactions between surface-active agents and different fractions of oil helps us to develop successful surfactant-based oil recovery methods.Over the past few years, surface pressure measurement has fundamental importance in many areas, particularly, aerodynamic research. Conventional methods involve pressure taps, but due to the nature of these pressure taps, only pressure information of isolated points on model surface is available, which limit their applications in aerodynamics studies. Recently the newly developed approach, pressure sensitive paint (PSP) has revolutionized such pressure measurements and various PSP materials have been developed for aerodynamics research. Hence, the main focus of this review is to study the interactions of polymers with different oxygen probes and polymeric role as supporting material in the maturation of PSP. In this review, the selected PSP materials are categorically elucidated in terms of their advantages and limitations to give a fair insight about their applicability. Further, we have summarized and articulated such particular optical oxygen sensing materials either that have been used as PSP or have potential to be used as PSP materials.
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