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This study not only provides proof-of-principle for the covalent approach but also highlights the need for a detailed mechanistic insight into the photophysical processes underpinning solid state TTA-UC.Ionic liquids (ILs) with long alkyl substituents are amphiphilic, which leads to a bicontinuous liquid structure. The strongly interacting anionic and cationic head groups form a long range charge network, with the hydrocarbon tails forming a nonpolar domain. Such nonpolar domains have been shown to dissolve a variety of neutral organic solvents. In mixtures of ILs with solvents the neutral organic molecules residing in the nonpolar domains experience different environments and friction from the charged cations and anions. Thus, the neutral molecules diffuse much faster than predicted by hydrodynamic scaling using the average viscosity of the mixture. In this work, we report studies on the structure and transport properties of mixtures of 1-octanol with the IL trihexyltetradecylphosphonium bis(trifluoromethylsulfonyl)imide (P6,6,6,14+/NTf2-). The majority of the atom fraction in the P6,6,6,14+ cation comprises four hydrocarbon substituents. The unique amphiphilic nature of ILs with the P6,6,6,14+ cation makes 1-octanol fully miscible with the IL at ambient temperatures. X-ray scattering experiments show that the IL structure persists in the mixtures for 1-octanol mole fractions as large as xoct = 0.90. The self-diffusion coefficients of the three molecular species in the mixtures were measured by NMR experiments. The self-diffusion of the P6,6,6,14+ cation is well described by the Stokes-Einstein equation, while the diffusivity of the NTf2- anion is slightly lower than the hydrodynamic prediction. The measured diffusivities of octanol in these mixtures are 1.3-4 times higher than the hydrodynamic predictions.The intermolecular contribution to the spectral density of the exciton-vibrational coupling of the homotrimeric Fenna-Matthews-Olson (FMO) light-harvesting protein of green sulfur bacteria P. aestuarii is analyzed by combining a normal mode analysis of the protein with the charge density coupling method for the calculation of local transition energies of the pigments. Correlations in site energy fluctuations across the whole FMO trimer are found at low vibrational frequencies. GSK-3 signaling pathway Including, additionally, the high-frequency intrapigment part of the spectral density, extracted from line-narrowing spectra, we study intra- and intermonomer exciton transfer. Whereas the intrapigment part of the spectral density is important for fast intramonomer exciton relaxation, the intermolecular contributions (due to pigment-environment coupling) determine the intermonomer exciton transfer. Neither the variations of the local Huang-Rhys factors nor the correlations in site energy fluctuations have a critical influence on energy transfer. At room temperature, the intermonomer transfer in the FMO protein occurs on a 10 ps time scale, whereas intramonomer exciton equilibration is roughly two orders of magnitude faster. At cryogenic temperatures, intermonomer transfer limits the lifetimes of the lowest exciton band. The lifetimes are found to increase between 20 ps in the center of this band up to 100 ps toward lower energies, which is in very good agreement with the estimates from hole burning data. Interestingly, exciton delocalization in the FMO monomers is found to slow down intermonomer energy transfer, at both physiological and cryogenic temperatures.We study in detail the first three leading terms of the large coupling-strength limit of the adiabatic connection that has as weak-interaction expansion the Møller-Plesset perturbation theory. We first focus on the H atom, both in the spin-polarized and the spin-unpolarized cases, reporting numerical and analytical results. In particular, we derive an asymptotic equation that turns out to have simple analytical solutions for certain channels. The asymptotic H atom solution for the spin-unpolarized case is then shown to be variationally optimal for the many-electron spin-restricted closed-shell case, providing expressions for the large coupling-strength density functionals up to the third leading order. We also analyze the H2 molecule and the uniform electron gas.We have used ellipsometry to characterize the anisotropy in stable polymer glasses prepared by physical vapor deposition. These measurements reveal birefringence values (as measured by the magnitude of in-plane vs out-of-plane refractive index) less than 0.002 in vapor-deposited polystyrenes with N from 6 to 12 and with fictive temperatures between 10 K and 35 K below the Tg values. We have measured the thermal expansivity of these stable glasses and compared to ordinary rejuvenated glass. The thermal expansivity of the stable glasses is less than that of ordinary glass with a difference that increases as the fictive temperature Tf decreases.A suite of quantum embedding methods have recently been developed where the Schmidt decomposition is applied to the full system wavefunction to derive basis states that preserve the entanglement between the fragment and the bath. The quality of these methods can depend heavily on the quality of the initial full system wavefunction. Most of these methods, including bootstrap embedding (BE) [M. Welborn et al; J. Chem. Phys. 145, 074102 (2016)], start from a spin-restricted mean-field wavefunction [call this restricted BE (RBE)]. Given that spin-unrestricted wavefunctions can capture a significant amount of strong correlation at the mean-field level, we suspect that starting from a spin-unrestricted mean-field wavefunction will improve these embedding methods for strongly correlated systems. In this work, BE is generalized to an unrestricted Hartree-Fock bath [call this unrestricted BE (UBE)], and UBE is applied to model hydrogen ring systems. UBE's improved versatility over RBE is utilized to calculate high spin symmetry states that were previously unattainable with RBE. Ionization potentials, electron affinities, and spin-splittings are computed using UBE with accuracy on par with spin-unrestricted coupled cluster singles and doubles. Even for cases where RBE is viable, UBE converges more reliably. We discuss the limitations or weaknesses of each calculation and how improvements to RBE and density matrix embedding theory these past few years can also improve UBE.Accurate prediction of water properties in its gas and condensed phases, including the interaction of water with surfaces, is of prime importance for many scientific disciplines. However, accurate simulation of all water properties together within semilocal approximations of the density functional theory possesses great challenges. The Strongly Constrained and Appropriately Normed semilocal density functional, which satisfies 17 known exact constraints and includes the intermediate range van der Waals interaction, performs quite well for different properties of water including the correct energy ordering of isomers. Despite its impressive performance, the energy overestimation for water isomers, ice lattice energies, and volume underestimation for ice are noticeable. However, it is recently shown that [S. Jana et al., J. Chem. Theory Comput. 16(2), 974-987 (2020)] meta-generalized gradient approximations based on the density matrix expansion [i.e., Tao-Mo (TM) and revised TM (revTM)] can achieve quite a good accuracy for the diverse properties of water. In this paper, we assess the performance of the dispersion corrected counterparts of the TM and revTM functionals. It is shown that the dispersion corrected counterparts of both methods are also quite accurate for diverse water properties, especially for the water-solid interactions. Moreover, the extent of accuracy of TM-based functionals is also analyzed from the viewpoint of the density and functional-driven error. Finally, a comparison in the performance of the dispersion corrected functionals is exhibited. It is shown that the "Optimized Power" damping function together with Grimme's D3 correction and revTM functional is in excellent agreement for the water adsorption on carbon nanostructure materials and ice-lattice mismatch problem without deviating accuracy of other water properties compared to its bare functional.Fingerprint distances, which measure the similarity of atomic environments, are commonly calculated from atomic environment fingerprint vectors. In this work, we present the simplex method that can perform the inverse operation, i.e., calculating fingerprint vectors from fingerprint distances. The fingerprint vectors found in this way point to the corners of a simplex. For a large dataset of fingerprints, we can find a particular largest simplex, whose dimension gives the effective dimension of the fingerprint vector space. We show that the corners of this simplex correspond to landmark environments that can be used in a fully automatic way to analyze structures. In this way, we can, for instance, detect atoms in grain boundaries or on edges of carbon flakes without any human input about the expected environment. By projecting fingerprints on the largest simplex, we can also obtain fingerprint vectors that are considerably shorter than the original ones but whose information content is not significantly reduced.The adsorption of reactants is an elementary step in the interaction of molecules with liquid or solid surfaces. We recently reported on the trapping of n-butane on the frozen surfaces of ionic liquids (ILs), namely, 1-alkyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide ILs ([CnC1Im][Tf2N]; n = 1, 2, 3, and 8). To study the influence of the anion, we now present results concerning the trapping of n-butane on 1-alkyl-3-methylimidazolium hexafluorophosphate ILs ([CnC1Im][PF6]; n = 2, 4, and 8), that is, ILs with a smaller anion. The adsorption energies close to zero coverage are determined from the temperature dependence of the initial trapping probability using a novel approach. For both groups of ILs, the binding energy is dominated by the interaction of n-butane with the alkyl chain of the cation, whereas the ionic headgroups contribute only weakly. Comparing ILs with different alkyl chains at the IL cation, we find that the adsorption strength of n-butane increases with increasing length of the alkyl chain. In addition, detailed information on the new setup and the data analysis is provided.Unitary coupled cluster (UCC), originally developed as a variational alternative to the popular traditional coupled cluster method, has seen a resurgence as a functional form for use on quantum computers. However, the number of excitors present in the Ansatz often presents a barrier to implementation on quantum computers. Given the natural sparsity of wavefunctions obtained from quantum Monte Carlo methods, we consider here a stochastic solution to the UCC problem. Using the coupled cluster Monte Carlo framework, we develop cluster selection schemes that capture the structure of the UCC wavefunction, as well as its Trotterized approximation, and use these to solve the corresponding projected equations. Due to the fast convergence of the equations with order in the cluster expansion, this approach scales polynomially with the size of the system. Unlike traditional UCC implementations, our approach naturally produces a non-variational estimator for the energy in the form of the projected energy. For unitary coupled cluster singles and doubles (UCCSD) in small systems, we find that this agrees well with the expectation value of the energy and, in the case of two electrons, with full configuration interaction results.
Website: https://www.selleckchem.com/GSK-3.html
     
 
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