Notes![what is notes.io? What is notes.io?](/theme/images/whatisnotesio.png)
![]() ![]() Notes - notes.io |
• Ankley, G. T., & Villeneuve, D. L. (2006). The fathead minnow in aquatic toxicology: Past, present and future. Aquatic Toxicology, 78(1), 91-102. doi:http://dx.doi.org/10.1016/j.aquatox.2006.01.018
• Jovanovic, B., Goetz, F. W., Goetz, G. W., & Palic, D. (2011). Immunological stimuli change expression of genes and neutrophil function in fathead minnow pimephales promelas rafinesque. Journal of Fish Biology, 78(4), 1054-1072. doi:10.1111/j.1095-8649.2011.02919.x [doi]
• Genome ID: 13167
• Ankley, G. T., & Villeneuve, D. L. (2006). The fathead minnow in aquatic toxicology: Past, present and future. Aquatic Toxicology, 78(1), 91-102. doi:http://dx.doi.org/10.1016/j.aquatox.2006.01.018
• Page, L. M., & Burr, B. M. (2011). Peterson field guide to freshwater fishes of north america north of mexico. New York: Houghton Mifflin Harcourt.
• UniProt Consortium. (2014). Activities at the universal protein resource (UniProt). Nucleic Acids Research, 42(Database issue), D191-8. doi:10.1093/nar/gkt1140 [doi]
• GO Consortium (2008) The Gene Ontology project in 2008. Nucleic Acids Res 36: D440-D444. PubMed: 17984083.
• Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C., & Kanehisa, M. (2007). KAAS: An automatic genome annotation and pathway reconstruction server. Nucleic Acids Research, 35(Web Server issue), W182-5. doi:gkm321 [pii]
• Heo, Y., Wu, X. L., Chen, D., Ma, J., & Hwu, W. M. (2014). BLESS: bloom filter-based error correction solution for high-throughput sequencing reads. Bioinformatics, btu030.
• Grabherr, M.,G., Haas, B.,J., Yassour, ,Moran, Levin, J.,Z., Thompson, D.,A., Amit, ,Ido, et al. Full-length transcriptome assembly from RNA-seq data without a reference genome.
• Haas, B.,J., Papanicolaou, ,Alexie, Yassour, ,Moran, Grabherr, ,Manfred, Blood, P.,D., Bowden, ,Joshua, et al. De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis.
• Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature methods, 9(4), 357-359.
• Li, B., & Dewey, C. N. (2011). RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC bioinformatics, 12(1), 323.
• Grabherr, M.,G., Haas, B.,J., Yassour, ,Moran, Levin, J.,Z., Thompson, D.,A., Amit, ,Ido, et al. Full-length transcriptome assembly from RNA-seq data without a reference genome.
• Haas, B.,J., Papanicolaou, ,Alexie, Yassour, ,Moran, Grabherr, ,Manfred, Blood, P.,D., Bowden, ,Joshua, et al. De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis.
• Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology, 215(3), 403-410. doi:http://dx.doi.org/10.1016/S0022-2836(05)80360-2
• UniProt Consortium. (2014). Activities at the universal protein resource (UniProt). Nucleic Acids Research, 42(Database issue), D191-8. doi:10.1093/nar/gkt1140 [doi]
• Sonnhammer, E. L., von Heijne, G., & Krogh, A. (1998). A hidden markov model for predicting transmembrane helices in protein sequences. Proceedings / ...International Conference on Intelligent Systems for Molecular Biology ; ISMB.International Conference on Intelligent Systems for Molecular Biology, 6, 175-182.
• Finn, R. D., Tate, J., Mistry, J., Coggill, P. C., Sammut, S. J., et al. (2008). The pfam protein families database. Nucleic Acids Research, 36(Database issue), D281-8. doi:gkm960 [pii]
• Petersen, T. N., Brunak, S., von Heijne, G., & Nielsen, H. (2011). SignalP 4.0: Discriminating signal peptides from transmembrane regions. Nat Meth, 8(10), 785-786. Retrieved from http://dx.doi.org/10.1038/nmeth.1701
• Krogh, A., Larsson, B., von Heijne, G., & Sonnhammer, E. L. (2001). Predicting transmembrane protein topology with a hidden markov model: Application to complete genomes. Journal of Molecular Biology, 305(3), 567-580. doi:10.1006/jmbi.2000.4315 [doi]
• Lagesen, K., Hallin, P., Rodland, E. A., Staerfeldt, H. H., Rognes, T., & Ussery, D. W. (2007). RNAmmer: Consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Research, 35(9), 3100-3108. doi:gkm160 [pii]
• Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., et al. (2006). WEGO: A web tool for plotting GO annotations. Nucleic Acids Research, 34(Web Server issue), W293-7. doi:34/suppl_2/W293 [pii]
• Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C., & Kanehisa, M. (2007). KAAS: An automatic genome annotation and pathway reconstruction server. Nucleic Acids Research, 35(Web Server issue), W182-5. doi:gkm321 [pii]
• Grabherr, M.,G., Haas, B.,J., Yassour, ,Moran, Levin, J.,Z., Thompson, D.,A., Amit, ,Ido, et al. Full-length transcriptome assembly from RNA-seq data without a reference genome.
• Haas, B.,J., Papanicolaou, ,Alexie, Yassour, ,Moran, Grabherr, ,Manfred, Blood, P.,D., Bowden, ,Joshua, et al. De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis.
• Geneious version 7.1.5 created by Biomatters. Available from http://www.geneious.com/
![]() |
Notes is a web-based application for online taking notes. You can take your notes and share with others people. If you like taking long notes, notes.io is designed for you. To date, over 8,000,000,000+ notes created and continuing...
With notes.io;
- * You can take a note from anywhere and any device with internet connection.
- * You can share the notes in social platforms (YouTube, Facebook, Twitter, instagram etc.).
- * You can quickly share your contents without website, blog and e-mail.
- * You don't need to create any Account to share a note. As you wish you can use quick, easy and best shortened notes with sms, websites, e-mail, or messaging services (WhatsApp, iMessage, Telegram, Signal).
- * Notes.io has fabulous infrastructure design for a short link and allows you to share the note as an easy and understandable link.
Fast: Notes.io is built for speed and performance. You can take a notes quickly and browse your archive.
Easy: Notes.io doesn’t require installation. Just write and share note!
Short: Notes.io’s url just 8 character. You’ll get shorten link of your note when you want to share. (Ex: notes.io/q )
Free: Notes.io works for 14 years and has been free since the day it was started.
You immediately create your first note and start sharing with the ones you wish. If you want to contact us, you can use the following communication channels;
Email: [email protected]
Twitter: http://twitter.com/notesio
Instagram: http://instagram.com/notes.io
Facebook: http://facebook.com/notesio
Regards;
Notes.io Team