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cellranger count --id S1H_counts --fastqs /benoukraf_lab/scRNAseq/HippoAD/ --sample 1H_MPS12348699_D07_11409 --transcriptome /benoukraf_lab/users/zia/yard/Rattus_norvegicus_genome --expect-cells 8000
./cellranger-7.1.0/bin/cellranger count --id 33H_counts --fastqs /benoukraf_lab/scRNAseq/HippoAD/ --sample 33H_MPS12348699_H07_11409 --transcriptome /benoukraf_lab/users/zia/yard/Rattus_norvegicus_genome --expect-cells 8000
./cellranger-7.1.0/bin/cellranger count --id 34H_counts --fastqs /benoukraf_lab/scRNAseq/HippoAD/ --sample 34H_MPS12348699_E08_11409 --transcriptome /benoukraf_lab/users/zia/yard/Rattus_norvegicus_genome --expect-cells 8000
./cellranger-7.1.0/bin/cellranger count --id 35H_counts --fastqs /benoukraf_lab/scRNAseq/HippoAD/ --sample 35H_MPS12348699_B09_11409 --transcriptome /benoukraf_lab/users/zia/yard/Rattus_norvegicus_genome --expect-cells 8000
./cellranger-7.1.0/bin/cellranger count --id 36H_counts --fastqs /benoukraf_lab/scRNAseq/HippoAD/ --sample 36H_MPS12348699_G09_11409 --transcriptome /benoukraf_lab/users/zia/yard/Rattus_norvegicus_genome --expect-cells 8000
./cellranger-7.1.0/bin/cellranger count --id="S2H --fastqs /benoukraf_lab/scRNAseq/HippoAD/ --sample=" H_MPS12348699_D07_11409,2H_MPS12348699_A08_11409" --transcriptome /benoukraf_lab/users/zia/yard/Rattus_norvegicus_genome --expect-cells 8000
scp -r [email protected]:/benoukraf_lab/users/zia/apps/1H_counts/outs/web_summary.html ./
/benoukraf_lab/users/zia/apps/sampleH1/outs/web_summary.html
10H_MPS12348699_B08_11409
11H_MPS12348699_G08_11409
12H_MPS12348699_D09_11409
13H_MPS12348699_A10_11409
14H_MPS12348699_E10_11409
15H_MPS12348699_A11_11409
16H_MPS12348699_E11_11409
17H_MPS12348699_F07_11409
18H_MPS12348699_C08_11409
19H_MPS12348699_H08_11409
1H_MPS12348699_D07_11409
20H_MPS12348699_E09_11409
21H_MPS12348699_B10_11409
22H_MPS12348699_F10_11409
23H_MPS12348699_B11_11409
24H_MPS12348699_F11_11409
25H_MPS12348699_G07_11409
26H_MPS12348699_D08_11409
27H_MPS12348699_A09_11409
28H_MPS12348699_F09_11409
29H_MPS12348699_C10_11409
2H_MPS12348699_A08_11409
30H_MPS12348699_G10_11409
31H_MPS12348699_C11_11409
32H_MPS12348699_G11_11409
33H_MPS12348699_H07_11409
34H_MPS12348699_E08_11409
35H_MPS12348699_B09_11409
36H_MPS12348699_G09_11409
3H_MPS12348699_F08_11409
4H_MPS12348699_C09_11409
5H_MPS12348699_H09_11409
6H_MPS12348699_D10_11409
7H_MPS12348699_H10_11409
8H_MPS12348699_D11_11409
9H_MPS12348699_E07_11409
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